Genomic Location: not available for this species
NR annotation: CAB3999616.1, Tubulin-specific chaperone D [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999617.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9BTW9 | Tubulin-specific chaperone D OS=Homo sapiens OX=9606 GN=TBCD PE=1 SV=2 |
| Q28205 | Tubulin-specific chaperone D OS=Bos taurus OX=9913 GN=TBCD PE=1 SV=1 |
| Q5ZI87 | Tubulin-specific chaperone D OS=Gallus gallus OX=9031 GN=TBCD PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003160 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12612 all species → | TFCD_C | Tubulin folding cofactor D C terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022577 all species → | Domain | Tubulin-specific chaperone D, C-terminal | Interproscan |
| IPR033162 all species → | Family | Tubulin-folding cofactor D | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12658 all species → | BETA-TUBULIN COFACTOR D | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000226 all species → | Biological Process | microtubule cytoskeleton organization | Interproscan |
| GO:0005096 all species → | Molecular Function | GTPase activator activity | Interproscan |
| GO:0006457 all species → | Biological Process | protein folding | Interproscan |
| GO:0007021 all species → | Biological Process | tubulin complex assembly | Interproscan |
| GO:0007023 all species → | Biological Process | post-chaperonin tubulin folding pathway | Interproscan |
| GO:0016328 all species → | Cellular Component | lateral plasma membrane | Interproscan |
| GO:0034333 all species → | Biological Process | adherens junction assembly | Interproscan |
| GO:0048487 all species → | Molecular Function | beta-tubulin binding | Interproscan |
| GO:0070830 all species → | Biological Process | bicellular tight junction assembly | Interproscan |
CAB3999617.1.Transcript abundance of CAB3999617.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
