Genomic Location: not available for this species
NR annotation: CAB3999847.1, Vacuolar -sorting-associated 36 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999847.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q7ZVK4 | Vacuolar protein-sorting-associated protein 36 OS=Danio rerio OX=7955 GN=vps36 PE=2 SV=1 |
| Q6DDF4 | Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis OX=8355 GN=vps36 PE=2 SV=1 |
| A5PK00 | Vacuolar protein-sorting-associated protein 36 OS=Bos taurus OX=9913 GN=VPS36 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004808 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04157 all species → | EAP30 | EAP30/Vps36 family | Family | Interproscan |
| PF11605 all species → | Vps36_ESCRT-II | Vacuolar protein sorting protein 36 Vps36 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR037855 all species → | Family | Vacuolar protein sorting protein 36 | Interproscan |
| IPR021648 all species → | Domain | Vacuolar protein sorting protein 36, GLUE domain | Interproscan |
| IPR040608 all species → | Family | Snf8/Vps36 family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13128 all species → | VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000814 all species → | Cellular Component | ESCRT II complex | Interproscan |
| GO:0031902 all species → | Cellular Component | late endosome membrane | Interproscan |
| GO:0032509 all species → | Biological Process | endosome transport via multivesicular body sorting pathway | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0043328 all species → | Biological Process | protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | Interproscan |
| GO:0032266 all species → | Molecular Function | phosphatidylinositol-3-phosphate binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12190 | VPS36, EAP45; ESCRT-II complex subunit VPS36 | - | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB3999847.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 23.99 | 41.33 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 16.13 | 48.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 14.46 | 61.69 | |
| apical branchlet · Control at T0 | 4 | 2 | 7.17 | 15.28 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
