Genomic Location: not available for this species
NR annotation: CAB3999950.1, Indoleamine 2,3-dioxygenase 2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB3999950.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| F1LV46 | Indoleamine 2,3-dioxygenase 2 OS=Rattus norvegicus OX=10116 GN=Ido2 PE=2 SV=4 |
| Q9ERD9 | Indoleamine 2,3-dioxygenase 1 OS=Rattus norvegicus OX=10116 GN=Ido1 PE=2 SV=1 |
| Q8R0V5 | Indoleamine 2,3-dioxygenase 2 OS=Mus musculus OX=10090 GN=Ido2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002752 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01231 all species → | IDO | Indoleamine 2,3-dioxygenase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037217 all species → | Homologous_superfamily | Tryptophan/Indoleamine 2,3-dioxygenase-like | Interproscan |
| IPR000898 all species → | Family | Indoleamine 2,3-dioxygenase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28657 all species → | INDOLEAMINE 2,3-DIOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0019441 all species → | Biological Process | tryptophan catabolic process to kynurenine | Interproscan |
| GO:0020037 all species → | Molecular Function | heme binding | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0004833 all species → | Molecular Function | tryptophan 2,3-dioxygenase activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0033754 all species → | Molecular Function | indoleamine 2,3-dioxygenase activity | Interproscan |
| GO:0034354 all species → | Biological Process | 'de novo' NAD biosynthetic process from tryptophan | Interproscan |
CAB3999950.1.Transcript abundance of CAB3999950.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
