Genomic Location: not available for this species
NR annotation: CAB4000049.1, Transmembrane 56 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4000049.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8CGF5 | TLC domain-containing protein 4 OS=Mus musculus OX=10090 GN=Tlcd4 PE=2 SV=1 |
| Q6GLX2 | TLC domain-containing protein 4-A OS=Xenopus laevis OX=8355 GN=tlcd4-a PE=2 SV=1 |
| Q6P4N1 | TLC domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=tlcd4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009056 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03798 all species → | TRAM_LAG1_CLN8 | TLC domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050846 all species → | Family | TLC domain-containing | Interproscan |
| IPR006634 all species → | Domain | TRAM/LAG1/CLN8 homology domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13439 all species → | CT120 PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0055088 all species → | Biological Process | lipid homeostasis | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
CAB4000049.1.Transcript abundance of CAB4000049.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
