Gene detail

Detailed information of CAB4000122.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4000122.1, vesicle transport through interaction with t-SNAREs homolog 1B-like [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Sequence

No sequence record for CAB4000122.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P58200	Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus OX=10116 GN=Vti1b PE=1 SV=2
Q9UEU0	Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens OX=9606 GN=VTI1B PE=1 SV=3
Q2KIU0	Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus OX=9913 GN=VTI1B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002078 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05008 all species →	V-SNARE	Vesicle transport v-SNARE protein N-terminus	Family	Interproscan
PF12352 all species →	V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038407 all species →	Homologous_superfamily	Vesicle transport v-SNARE, N-terminal domain superfamily	Interproscan
IPR007705 all species →	Domain	Vesicle transport v-SNARE, N-terminal	Interproscan
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR010989 all species →	Homologous_superfamily	SNARE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21230 all species →	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012507 all species →	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0016236 all species →	Biological Process	macroautophagy	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan
GO:1903076 all species →	Biological Process	regulation of protein localization to plasma membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08493	VTI1; vesicle transport through interaction with t-SNAREs 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.