Genomic Location: not available for this species
NR annotation: CAB4000177.1, phosphorylase b kinase regulatory subunit alpha, liver isoform-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4000177.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P18688 | Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform OS=Oryctolagus cuniculus OX=9986 GN=PHKA1 PE=1 SV=1 |
| P18826 | Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform OS=Mus musculus OX=10090 GN=Phka1 PE=1 SV=3 |
| Q64649 | Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform OS=Rattus norvegicus OX=10116 GN=Phka1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001098 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00723 all species → | Glyco_hydro_15 | Glycosyl hydrolases family 15 | Repeat | Interproscan |
| PF00145 all species → | DNA_methylase | C-5 cytosine-specific DNA methylase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR008734 all species → | Family | Phosphorylase kinase alpha/beta subunit | Interproscan |
| IPR011613 all species → | Domain | GH15-like domain | Interproscan |
| IPR018117 all species → | Active_site | DNA methylase, C-5 cytosine-specific, active site | Interproscan |
| IPR001525 all species → | Family | C-5 cytosine methyltransferase | Interproscan |
| IPR008928 all species → | Homologous_superfamily | Six-hairpin glycosidase superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10749 all species → | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005516 all species → | Molecular Function | calmodulin binding | Interproscan |
| GO:0005964 all species → | Cellular Component | phosphorylase kinase complex | Interproscan |
| GO:0005977 all species → | Biological Process | glycogen metabolic process | Interproscan |
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0005975 all species → | Biological Process | carbohydrate metabolic process | Interproscan |
CAB4000177.1.Transcript abundance of CAB4000177.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
