Gene detail

Detailed information of CAB4000471.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4000471.1, radixin [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4000471.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ49	Moesin OS=Bos taurus OX=9913 GN=MSN PE=2 SV=3
P26042	Moesin OS=Sus scrofa OX=9823 GN=MSN PE=2 SV=3
P35241	Radixin OS=Homo sapiens OX=9606 GN=RDX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001429 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20492 all species →	ERM_helical	Ezrin/radixin/moesin, alpha-helical domain	Coiled-coil	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF00769 all species →	ERM_C	Ezrin/radixin/moesin family C terminal	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046810 all species →	Domain	Ezrin/radixin/moesin, alpha-helical domain	Interproscan
IPR041789 all species →	Domain	ERM family, FERM domain C-lobe	Interproscan
IPR011174 all species →	Family	Ezrin/radixin/moesin	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR011259 all species →	Domain	Ezrin/radixin/moesin, C-terminal	Interproscan
IPR008954 all species →	Homologous_superfamily	Moesin tail domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR000798 all species →	Family	Ezrin/radixin/moesin-like	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23281 all species →	MERLIN/MOESIN/EZRIN/RADIXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0008360 all species →	Biological Process	regulation of cell shape	Interproscan
GO:0030175 all species →	Cellular Component	filopodium	Interproscan
GO:0045177 all species →	Cellular Component	apical part of cell	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:1902115 all species →	Biological Process	regulation of organelle assembly	Interproscan
GO:1902966 all species →	Biological Process	positive regulation of protein localization to early endosome	Interproscan
GO:2000643 all species →	Biological Process	positive regulation of early endosome to late endosome transport	Interproscan
GO:0008092 all species →	Molecular Function	cytoskeletal protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4000471.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4000471.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

21TPM > 0

4Conditions

269.5Max TPM

151.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	184.66	249.11
apical branchlet · Temperature treatment at T0	6	6	160.06	269.51
apical branchlet · Temperature treatment at T25	5	5	114.91	214.82
apical branchlet · Control at T0	4	4	136.38	189.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	249.11
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	231.09
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	203.97
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	166.36
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	132.82
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	124.60
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	269.51
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	259.77
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	171.97
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	123.21
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	103.22
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	32.66
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	214.82
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	213.51
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	113.17
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	23.97
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	9.08
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	189.59
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	180.63
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	93.51
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	81.76

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.