Genomic Location: not available for this species
NR annotation: CAB4000990.1, NFX1-type zinc finger-containing 1, partial, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4000990.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9P2E3 | NFX1-type zinc finger-containing protein 1 OS=Homo sapiens OX=9606 GN=ZNFX1 PE=1 SV=2 |
| Q8R151 | NFX1-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Znfx1 PE=1 SV=3 |
| E9P860 | NFX1-type zinc finger-containing protein 1 homolog OS=Caenorhabditis elegans OX=6239 GN=znfx-1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000266 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13086 all species → | AAA_11 | AAA domain | Domain | Interproscan |
| PF13087 all species → | AAA_12 | AAA domain | Domain | Interproscan |
| PF04910 all species → | Tcf25 | Transcriptional repressor TCF25 | Repeat | Interproscan |
| PF20173 all species → | ZnF_RZ-type | RZ type zinc finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR041677 all species → | Domain | DNA2/NAM7 helicase, helicase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR000967 all species → | Domain | Zinc finger, NF-X1-type | Interproscan |
| IPR041679 all species → | Domain | DNA2/NAM7 helicase-like, C-terminal | Interproscan |
| IPR006994 all species → | Family | TCF25/Rqc1 | Interproscan |
| IPR047187 all species → | Domain | Upf1-like, C-terminal helicase domain | Interproscan |
| IPR046439 all species → | Domain | Zinc finger, RZ-type | Interproscan |
| IPR045055 all species → | Family | DNA2/NAM7-like helicase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10887 all species → | DNA2/NAM7 HELICASE FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004386 all species → | Molecular Function | helicase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0031048 all species → | Biological Process | regulatory ncRNA-mediated heterochromatin formation | Interproscan |
| GO:0031380 all species → | Cellular Component | nuclear RNA-directed RNA polymerase complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K27391 | ZNFX1; NFX1-type zinc finger-containing protein 1 | - | RIG-I-like receptor signaling pathway | ko04622 | deepkoala |
Transcript abundance of CAB4000990.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 4.35 | 6.84 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 2.04 | 5.91 | |
| apical branchlet · Temperature treatment at T25 | 5 | 5 | 3.42 | 5.84 | |
| apical branchlet · Control at T0 | 4 | 4 | 2.49 | 3.48 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
