Genomic Location: not available for this species
NR annotation: CAB4001168.1, sodium channel and clathrin linker 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4001168.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q96NL6 | Sodium channel and clathrin linker 1 OS=Homo sapiens OX=9606 GN=SCLT1 PE=1 SV=2 |
| G5E861 | Sodium channel and clathrin linker 1 OS=Mus musculus OX=10090 GN=Sclt1 PE=1 SV=1 |
| Q8CJ99 | Sodium channel and clathrin linker 1 OS=Rattus norvegicus OX=10116 GN=Sclt1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003174 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15964 all species → | CCCAP | Centrosomal colon cancer autoantigen protein family | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031887 all species → | Family | Serologically defined colon cancer antigen 8 | Interproscan |
| IPR038911 all species → | Family | Sodium channel and clathrin linker 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR35970 all species → | SODIUM CHANNEL AND CLATHRIN LINKER 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| GO:0007098 all species → | Biological Process | centrosome cycle | Interproscan |
| GO:0005814 all species → | Cellular Component | centriole | Interproscan |
| GO:0045162 all species → | Biological Process | clustering of voltage-gated sodium channels | Interproscan |
| GO:0060271 all species → | Biological Process | cilium assembly | Interproscan |
CAB4001168.1.Transcript abundance of CAB4001168.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
