Genomic Location: not available for this species
NR annotation: CAB4001205.1, groucho-2 isoform X7 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4001205.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q04727 | Transducin-like enhancer protein 4 OS=Homo sapiens OX=9606 GN=TLE4 PE=1 SV=3 |
| Q62441 | Transducin-like enhancer protein 4 OS=Mus musculus OX=10090 GN=Tle4 PE=1 SV=4 |
| Q04726 | Transducin-like enhancer protein 3 OS=Homo sapiens OX=9606 GN=TLE3 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003469 (this species only) |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Ubiquitin family | E3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03920 all species → | TLE_N | Groucho/TLE N-terminal Q-rich domain | Family | Interproscan |
| PF00400 all species → | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR005617 all species → | Domain | Groucho/TLE, N-terminal Q-rich domain | Interproscan |
| IPR009146 all species → | Family | Groucho/transducin-like enhancer | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR019775 all species → | Conserved_site | WD40 repeat, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10814 all species → | TRANSDUCIN-LIKE ENHANCER PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005667 all species → | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0090090 all species → | Biological Process | negative regulation of canonical Wnt signaling pathway | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04497 | GRO, TLE; groucho | - | Cytoskeleton proteins | ko04812 | deepkoala |
Transcript abundance of CAB4001205.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 6 | 111.41 | 296.72 | |
| apical branchlet · Temperature treatment at T0 | 6 | 6 | 94.17 | 295.72 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 32.85 | 92.99 | |
| apical branchlet · Control at T0 | 4 | 3 | 29.39 | 57.96 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
