Genomic Location: not available for this species
NR annotation: CAB4001777.1, Shroom2-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4001778.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q09JY9 | Protein Shroom2 OS=Xenopus tropicalis OX=8364 GN=shroom2 PE=2 SV=1 |
| Q13796 | Protein Shroom2 OS=Homo sapiens OX=9606 GN=SHROOM2 PE=1 SV=1 |
| Q7TP36 | Protein Shroom2 OS=Rattus norvegicus OX=10116 GN=Shroom2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002924 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08687 all species → | ASD2 | Apx/Shroom domain ASD2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR014799 all species → | Domain | Apx/Shrm Domain 2 | Interproscan |
| IPR027685 all species → | Family | Shroom family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15012 all species → | APICAL PROTEIN/SHROOM-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005912 all species → | Cellular Component | adherens junction | Interproscan |
| GO:0007015 all species → | Biological Process | actin filament organization | Interproscan |
| GO:0016324 all species → | Cellular Component | apical plasma membrane | Interproscan |
| GO:0030864 all species → | Cellular Component | cortical actin cytoskeleton | Interproscan |
| GO:0043296 all species → | Cellular Component | apical junction complex | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
CAB4001778.1.Transcript abundance of CAB4001778.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
