Genomic Location: not available for this species
NR annotation: CAB4001834.1, Ribosome maturation SBDS [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4001834.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A5D8M6 | Ribosome maturation protein SBDS OS=Xenopus laevis OX=8355 GN=sbds PE=2 SV=1 |
| Q6DIT8 | Ribosome maturation protein SBDS OS=Xenopus tropicalis OX=8364 GN=sbds PE=2 SV=1 |
| Q5ZIY4 | Ribosome maturation protein SBDS OS=Gallus gallus OX=9031 GN=SBDS PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008539 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01172 all species → | SBDS | Shwachman-Bodian-Diamond syndrome (SBDS) protein | Family | Interproscan |
| PF09377 all species → | SBDS_domain_II | SBDS protein, domain II | Domain | Interproscan |
| PF20750 all species → | PAP_NTPase | Poly(A) polymerase nucleotidyltransferase domain | Domain | Interproscan |
| PF20268 all species → | SBDS_C | SBDS protein, C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019783 all species → | Domain | Ribosome maturation protein SDO1/SBDS, N-terminal | Interproscan |
| IPR018978 all species → | Domain | Ribosome maturation protein SDO1/SBDS, central domain | Interproscan |
| IPR037188 all species → | Homologous_superfamily | Ribosome maturation protein Sdo1/SBDS, central domain superfamily | Interproscan |
| IPR036786 all species → | Homologous_superfamily | Ribosome maturation protein SBDS, N-terminal domain superfamily | Interproscan |
| IPR039100 all species → | Family | Ribosome maturation protein Sdo1/SBDS-like | Interproscan |
| IPR048840 all species → | Domain | Poly(A) polymerase, nucleotidyltransferase domain | Interproscan |
| IPR018023 all species → | Conserved_site | Ribosome maturation protein SBDS, conserved site | Interproscan |
| IPR046928 all species → | Domain | Ribosome maturation protein SDO1/SBDS, C-terminal domain | Interproscan |
| IPR002140 all species → | Family | Ribosome maturation protein Sdo1/SBDS | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10927 all species → | RIBOSOME MATURATION PROTEIN SBDS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0042254 all species → | Biological Process | ribosome biogenesis | Interproscan |
| GO:0042256 all species → | Biological Process | cytosolic ribosome assembly | Interproscan |
CAB4001834.1.Transcript abundance of CAB4001834.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 12.27 | 23.46 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 3.99 | 18.16 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 1.76 | 8.78 | |
| apical branchlet · Control at T0 | 4 | 1 | 3.37 | 13.47 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
