Genomic Location: not available for this species
NR annotation: CAB4002078.1, heparan sulfate 2-O-sulfotransferase hst-2-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002078.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5R621 | Heparan sulfate 2-O-sulfotransferase 1 OS=Pongo abelii OX=9601 GN=HS2ST1 PE=2 SV=1 |
| Q7LGA3 | Heparan sulfate 2-O-sulfotransferase 1 OS=Homo sapiens OX=9606 GN=HS2ST1 PE=1 SV=1 |
| O17645 | Heparan sulfate 2-O-sulfotransferase hst-2 OS=Caenorhabditis elegans OX=6239 GN=hst-2 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002482 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03567 all species → | Sulfotransfer_2 | Sulfotransferase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005331 all species → | Family | Sulfotransferase | Interproscan |
| IPR007734 all species → | Family | Heparan sulphate 2-O-sulfotransferase | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12129 all species → | HEPARAN SULFATE 2-O-SULFOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008146 all species → | Molecular Function | sulfotransferase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0004394 all species → | Molecular Function | heparan sulfate 2-O-sulfotransferase activity | Interproscan |
| GO:0015014 all species → | Biological Process | heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process | Interproscan |
| GO:0015015 all species → | Biological Process | heparan sulfate proteoglycan biosynthetic process, enzymatic modification | Interproscan |
CAB4002078.1.Transcript abundance of CAB4002078.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
