Genomic Location: not available for this species
NR annotation: CAB4002088.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002088.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8CF97 | Deubiquitinating protein VCPIP1 OS=Rattus norvegicus OX=10116 GN=Vcpip1 PE=1 SV=2 |
| Q96JH7 | Deubiquitinating protein VCPIP1 OS=Homo sapiens OX=9606 GN=VCPIP1 PE=1 SV=2 |
| Q8CDG3 | Deubiquitinating protein VCPIP1 OS=Mus musculus OX=10090 GN=Vcpip1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006707 (this species only) |
| Ubiquitin family | DUB|OTU|OTU · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02338 all species → | OTU | OTU-like cysteine protease | Family | Interproscan |
| PF19437 all species → | VCIP135_N | VCIP135 N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003323 all species → | Domain | OTU domain | Interproscan |
| IPR045827 all species → | Domain | Deubiquitinating protein VCPIP1, N-terminal | Interproscan |
| IPR039087 all species → | Family | Deubiquitinating protein VCPIP1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14843 all species → | DEUBIQUITINATING PROTEIN VCIP135 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004843 all species → | Molecular Function | cysteine-type deubiquitinase activity | Interproscan |
| GO:0016320 all species → | Biological Process | endoplasmic reticulum membrane fusion | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| GO:0035871 all species → | Biological Process | protein K11-linked deubiquitination | Interproscan |
| GO:0071108 all species → | Biological Process | protein K48-linked deubiquitination | Interproscan |
| GO:0090168 all species → | Biological Process | Golgi reassembly | Interproscan |
CAB4002088.1.Transcript abundance of CAB4002088.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
