Genomic Location: not available for this species
NR annotation: CAB4002109.1, stabilin-1 isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002109.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q8WWQ8 | Stabilin-2 OS=Homo sapiens OX=9606 GN=STAB2 PE=1 SV=3 |
| Q8R4U0 | Stabilin-2 OS=Mus musculus OX=10090 GN=Stab2 PE=1 SV=1 |
| Q9NY15 | Stabilin-1 OS=Homo sapiens OX=9606 GN=STAB1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002892 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12947 all species → | EGF_3 | EGF domain | Domain | Interproscan |
| PF02469 all species → | Fasciclin | Fasciclin domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036378 all species → | Homologous_superfamily | FAS1 domain superfamily | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR000782 all species → | Domain | FAS1 domain | Interproscan |
| IPR002049 all species → | Domain | Laminin-type EGF domain | Interproscan |
| IPR051146 all species → | Family | Phosphatidylserine Receptors and Protein Disulfide Isomerases | Interproscan |
| IPR024731 all species → | Domain | EGF domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24038 all species → | STABILIN | Interproscan |
CAB4002109.1. This gene does have a gene model — the search simply returned no hit.CAB4002109.1.Transcript abundance of CAB4002109.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 1.64 | 3.98 | |
| apical branchlet · Temperature treatment at T0 | 6 | 3 | 0.88 | 3.28 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 2.91 | 6.05 | |
| apical branchlet · Control at T0 | 4 | 3 | 5.24 | 16.55 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
