Detailed information of CAB4002229.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4002229.1, lamin [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

 Sequence
No sequence record for CAB4002229.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P11048Lamin-A OS=Xenopus laevis OX=8355 GN=lmna PE=2 SV=1
P20700Lamin-B1 OS=Homo sapiens OX=9606 GN=LMNB1 PE=1 SV=2
P70615Lamin-B1 OS=Rattus norvegicus OX=10116 GN=Lmnb1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003515 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038
all species →		FilamentIntermediate filament proteinCoiled-coilInterproscan
PF00932
all species →		LTDLamin Tail DomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039008
all species →		DomainIntermediate filament, rod domainInterproscan
IPR001322
all species →		DomainLamin tail domainInterproscan
IPR036415
all species →		Homologous_superfamilyLamin tail domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45721
all species →		LAMIN DM0-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005200
all species →		Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005635
all species →		Cellular Componentnuclear envelopeInterproscan
GO:0005652
all species →		Cellular Componentnuclear laminaInterproscan
GO:0006998
all species →		Biological Processnuclear envelope organizationInterproscan
GO:0007097
all species →		Biological Processnuclear migrationInterproscan
GO:0031507
all species →		Biological Processheterochromatin formationInterproscan
GO:0051664
all species →		Biological Processnuclear pore localizationInterproscan
GO:0090435
all species →		Biological Processprotein localization to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K07611LMNB; lamin B-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP