Genomic Location: not available for this species
NR annotation: CAB4002247.1, probable phospholipid-transporting ATPase IIB isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002247.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| F1Q4S1 | Probable phospholipid-transporting ATPase IIB OS=Danio rerio OX=7955 GN=atp9b PE=3 SV=1 |
| A1A4J6 | Probable phospholipid-transporting ATPase IIB OS=Bos taurus OX=9913 GN=ATP9B PE=2 SV=1 |
| P98195 | Probable phospholipid-transporting ATPase IIB OS=Mus musculus OX=10090 GN=Atp9b PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004099 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08282 all species → | Hydrolase_3 | haloacid dehalogenase-like hydrolase | Domain | Interproscan |
| PF16212 all species → | PhoLip_ATPase_C | Phospholipid-translocating P-type ATPase C-terminal | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR023214 all species → | Homologous_superfamily | HAD superfamily | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR001757 all species → | Family | P-type ATPase | Interproscan |
| IPR032630 all species → | Domain | P-type ATPase, C-terminal | Interproscan |
| IPR023298 all species → | Homologous_superfamily | P-type ATPase, transmembrane domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24092 all species → | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005768 all species → | Cellular Component | endosome | Interproscan |
| GO:0005802 all species → | Cellular Component | trans-Golgi network | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006890 all species → | Biological Process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | Interproscan |
| GO:0006897 all species → | Biological Process | endocytosis | Interproscan |
| GO:0045332 all species → | Biological Process | phospholipid translocation | Interproscan |
| GO:0140326 all species → | Molecular Function | ATPase-coupled intramembrane lipid transporter activity | Interproscan |
| GO:0005215 all species → | Molecular Function | transporter activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
CAB4002247.1.Transcript abundance of CAB4002247.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
