Genomic Location: not available for this species
NR annotation: CAB4002461.1, Spindly-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002461.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| B3DLE8 | Protein Spindly OS=Xenopus tropicalis OX=8364 GN=spdl1 PE=2 SV=1 |
| Q6NRW2 | Protein Spindly-B OS=Xenopus laevis OX=8355 GN=spdl1-b PE=2 SV=1 |
| Q5BIX7 | Protein Spindly-A OS=Xenopus laevis OX=8355 GN=spdl1-a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007291 (this species only) · gene tree & orthology |
CAB4002461.1 in Paramuricea clavata.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051149 all species → | Family | Spindly/BICDR Dynein Motor Adapter | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32123 all species → | BICD FAMILY-LIKE CARGO ADAPTER | Interproscan |
CAB4002461.1 in Paramuricea clavata.CAB4002461.1.Transcript abundance of CAB4002461.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 15.45 | 54.79 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 4.21 | 13.97 | |
| apical branchlet · Temperature treatment at T25 | 5 | 2 | 1.20 | 4.13 | |
| apical branchlet · Control at T0 | 4 | 2 | 2.26 | 5.30 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
