Genomic Location: not available for this species
NR annotation: CAB4002565.1, lissencephaly-1 homolog, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002565.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7S338 | Lissencephaly-1 homolog OS=Nematostella vectensis OX=45351 GN=v1g242515 PE=3 SV=1 |
| C3XVT5 | Lissencephaly-1 homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_59218 PE=3 SV=1 |
| B7PS00 | Lissencephaly-1 homolog OS=Ixodes scapularis OX=6945 GN=IscW_ISCW007420 PE=3 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006968 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08513 all species → | LisH | LisH | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006594 all species → | Conserved_site | LIS1 homology motif | Interproscan |
| IPR037190 all species → | Homologous_superfamily | LIS1, N-terminal | Interproscan |
CAB4002565.1. This gene does have a gene model — the search simply returned no hit.| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB4002565.1.Transcript abundance of CAB4002565.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
