Genomic Location: not available for this species
NR annotation: CAB4002598.1, UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002598.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A8LS12 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=murA PE=3 SV=1 |
| Q5LL90 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=murA PE=3 SV=1 |
| B6INF7 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=murA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010619 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00275 all species → | EPSP_synthase | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005750 all species → | Family | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Interproscan |
| IPR001986 all species → | Domain | Enolpyruvate transferase domain | Interproscan |
| IPR036968 all species → | Homologous_superfamily | Enolpyruvate transferase domain superfamily | Interproscan |
| IPR013792 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Interproscan |
| IPR050068 all species → | Family | UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA subfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43783 all species → | UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008760 all species → | Molecular Function | UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity | Interproscan |
| GO:0019277 all species → | Biological Process | UDP-N-acetylgalactosamine biosynthetic process | Interproscan |
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00790 | murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase | EC:2.5.1.7 | Peptidoglycan biosynthesis and degradation proteins | ko01011 | deepkoala |
Transcript abundance of CAB4002598.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 20.15 | 44.87 | |
| apical branchlet · Temperature treatment at T0 | 6 | 5 | 14.85 | 27.41 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 53.14 | 148.83 | |
| apical branchlet · Control at T0 | 4 | 1 | 4.89 | 19.55 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
