Genomic Location: not available for this species
NR annotation: CAB4002682.1, Cell cycle checkpoint RAD1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002682.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| O60671 | Cell cycle checkpoint protein RAD1 OS=Homo sapiens OX=9606 GN=RAD1 PE=1 SV=1 |
| Q5R7X9 | Cell cycle checkpoint protein RAD1 OS=Pongo abelii OX=9601 GN=RAD1 PE=2 SV=1 |
| Q9QWZ1 | Cell cycle checkpoint protein RAD1 OS=Mus musculus OX=10090 GN=Rad1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005419 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02144 all species → | Rad1 | Repair protein Rad1/Rec1/Rad17 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003021 all species → | Family | Rad1/Rec1/Rad17 | Interproscan |
| IPR046938 all species → | Homologous_superfamily | DNA clamp superfamily | Interproscan |
| IPR003011 all species → | Family | Cell cycle checkpoint protein, Rad1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10870 all species → | CELL CYCLE CHECKPOINT PROTEIN RAD1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000077 all species → | Biological Process | DNA damage checkpoint signaling | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0008408 all species → | Molecular Function | 3'-5' exonuclease activity | Interproscan |
| GO:0030896 all species → | Cellular Component | checkpoint clamp complex | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
CAB4002682.1.Transcript abundance of CAB4002682.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
