Gene detail

Detailed information of CAB4002729.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4002729.1, alpha-tubulin N-acetyltransferase 1-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4002729.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3RNE8	Alpha-tubulin N-acetyltransferase OS=Trichoplax adhaerens OX=10228 GN=TRIADDRAFT_53139 PE=3 SV=1
Q6PH17	Alpha-tubulin N-acetyltransferase 1 OS=Danio rerio OX=7955 GN=atat1 PE=1 SV=1
B2RZF9	Alpha-tubulin N-acetyltransferase 1 OS=Xenopus tropicalis OX=8364 GN=atat1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006228 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF00619 all species →	CARD	Caspase recruitment domain	Domain	Interproscan
PF05301 all species →	Acetyltransf_16	GNAT acetyltransferase, Mec-17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001315 all species →	Domain	CARD domain	Interproscan
IPR007965 all species →	Domain	Gcn5-related N-acetyltransferase (GNAT) domain, ATAT-type	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR038746 all species →	Family	Alpha-tubulin N-acetyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12327 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0019799 all species →	Molecular Function	tubulin N-acetyltransferase activity	Interproscan
GO:0071929 all species →	Biological Process	alpha-tubulin acetylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4002729.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4002729.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

12TPM > 0

4Conditions

15.3Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	6	7.14	12.73
apical branchlet · Temperature treatment at T0	6	4	4.98	15.33
apical branchlet · Temperature treatment at T25	5	1	0.15	0.75
apical branchlet · Control at T0	4	1	0.55	2.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	12.73
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	8.05
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.49
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.23
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.87
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.46
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	15.33
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	10.32
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.21
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.02
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.75
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	2.21
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.