Genomic Location: not available for this species
NR annotation: CAB4002898.1, nicotinate phosphoribosyltransferase isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002898.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9VQX4 | Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster OX=7227 GN=Naprt PE=2 SV=2 |
| Q95XX1 | Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans OX=6239 GN=nprt-1 PE=3 SV=3 |
| Q84WV8 | Nicotinate phosphoribosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=NAPRT2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004037 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17956 all species → | NAPRTase_C | Nicotinate phosphoribosyltransferase C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036068 all species → | Homologous_superfamily | Nicotinate phosphoribosyltransferase-like, C-terminal | Interproscan |
| IPR041619 all species → | Domain | Nicotinate phosphoribosyltransferase C-terminal domain | Interproscan |
| IPR007229 all species → | Family | Nicotinate phosphoribosyltransferase family | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11098 all species → | NICOTINATE PHOSPHORIBOSYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009435 all species → | Biological Process | NAD biosynthetic process | Interproscan |
| GO:0004516 all species → | Molecular Function | nicotinate phosphoribosyltransferase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0034355 all species → | Biological Process | NAD salvage | Interproscan |
CAB4002898.1.Transcript abundance of CAB4002898.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
