Genomic Location: not available for this species
NR annotation: CAB4002944.1, amidophosphoribosyltransferase-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002944.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P28173 | Amidophosphoribosyltransferase OS=Gallus gallus OX=9031 GN=PPAT PE=1 SV=1 |
| Q8CIH9 | Amidophosphoribosyltransferase OS=Mus musculus OX=10090 GN=Ppat PE=1 SV=1 |
| P35433 | Amidophosphoribosyltransferase OS=Rattus norvegicus OX=10116 GN=Ppat PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006531 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13522 all species → | GATase_6 | Glutamine amidotransferase domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005854 all species → | Family | Amidophosphoribosyltransferase | Interproscan |
| IPR017932 all species → | Domain | Glutamine amidotransferase type 2 domain | Interproscan |
| IPR000836 all species → | Domain | Phosphoribosyltransferase domain | Interproscan |
| IPR029055 all species → | Homologous_superfamily | Nucleophile aminohydrolases, N-terminal | Interproscan |
| IPR029057 all species → | Homologous_superfamily | Phosphoribosyltransferase-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11907 all species → | AMIDOPHOSPHORIBOSYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004044 all species → | Molecular Function | amidophosphoribosyltransferase activity | Interproscan |
| GO:0009113 all species → | Biological Process | purine nucleobase biosynthetic process | Interproscan |
| GO:0006164 all species → | Biological Process | purine nucleotide biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00764 | purF, PPAT; amidophosphoribosyltransferase | EC:2.4.2.14 | Peptidases and inhibitors | ko01002 | deepkoala |
Transcript abundance of CAB4002944.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
