Genomic Location: not available for this species
NR annotation: CAB4002946.1, midasin isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4002946.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9NU22 | Midasin OS=Homo sapiens OX=9606 GN=MDN1 PE=1 SV=2 |
| Q869L3 | Midasin OS=Dictyostelium discoideum OX=44689 GN=mdn1 PE=3 SV=2 |
| Q12019 | Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MDN1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001659 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17867 all species → | AAA_lid_7 | Midasin AAA lid domain | Domain | Interproscan |
| PF21108 all species → | MDN1_4th | Midasin AAA+ ATPase lid domain | Domain | Interproscan |
| PF07728 all species → | AAA_5 | AAA domain (dynein-related subfamily) | Domain | Interproscan |
| PF17865 all species → | AAA_lid_5 | Midasin AAA lid domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR040848 all species → | Domain | Midasin, AAA lid domain 7 | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR048617 all species → | Domain | Midasin, lid domain 4 | Interproscan |
| IPR011704 all species → | Domain | ATPase, dynein-related, AAA domain | Interproscan |
| IPR041190 all species → | Domain | Midasin AAA lid domain 5 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR48103 all species → | MIDASIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0000055 all species → | Biological Process | ribosomal large subunit export from nucleus | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0030687 all species → | Cellular Component | preribosome, large subunit precursor | Interproscan |
CAB4002946.1.Transcript abundance of CAB4002946.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
