Genomic Location: not available for this species
NR annotation: CAB4003097.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003098.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5SRE5 | Nucleoporin NUP188 OS=Homo sapiens OX=9606 GN=NUP188 PE=1 SV=1 |
| F6WXT2 | Nucleoporin NUP188 OS=Xenopus tropicalis OX=8364 GN=nup188 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002935 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21093 all species → | Nup188_N-subdom_III | Nucleoporin Nup188, N-terminal subdomain III | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR044840 all species → | Family | Nucleoporin Nup188 | Interproscan |
| IPR048883 all species → | Domain | Nucleoporin Nup188, N-terminal subdomain III | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR31431 all species → | NUCLEOPORIN NUP188 HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006405 all species → | Biological Process | RNA export from nucleus | Interproscan |
| GO:0006606 all species → | Biological Process | protein import into nucleus | Interproscan |
| GO:0017056 all species → | Molecular Function | structural constituent of nuclear pore | Interproscan |
| GO:0044611 all species → | Cellular Component | nuclear pore inner ring | Interproscan |
CAB4003098.1.Transcript abundance of CAB4003098.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
