Genomic Location: not available for this species
NR annotation: CAB4003294.1, oral-facial-digital syndrome 1 isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003294.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q80Z25 | Centriole and centriolar satellite protein OFD1 OS=Mus musculus OX=10090 GN=Ofd1 PE=1 SV=1 |
| O75665 | Centriole and centriolar satellite protein OFD1 OS=Homo sapiens OX=9606 GN=OFD1 PE=1 SV=1 |
| Q7SZK7 | Centriole and centriolar satellite protein ofd1 OS=Danio rerio OX=7955 GN=ofd1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003511 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16045 all species → | LisH_2 | LisH | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006594 all species → | Conserved_site | LIS1 homology motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR39063 all species → | ORAL-FACIAL-DIGITAL SYNDROME 1 PROTEIN HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| GO:0036064 all species → | Cellular Component | ciliary basal body | Interproscan |
| GO:0060287 all species → | Biological Process | epithelial cilium movement involved in determination of left/right asymmetry | Interproscan |
CAB4003294.1.Transcript abundance of CAB4003294.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
