Gene detail

Detailed information of CAB4003295.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4003295.1, ATP-dependent 6-phosphofructokinase, platelet type-like isoform X7 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4003295.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01813	ATP-dependent 6-phosphofructokinase, platelet type OS=Homo sapiens OX=9606 GN=PFKP PE=1 SV=2
Q5R636	ATP-dependent 6-phosphofructokinase, platelet type OS=Pongo abelii OX=9601 GN=PFKP PE=2 SV=1
P47859	ATP-dependent 6-phosphofructokinase, platelet type OS=Oryctolagus cuniculus OX=9986 GN=PFKP PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003848 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00365 all species →	PFK	Phosphofructokinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009161 all species →	Family	ATP-dependent 6-phosphofructokinase, eukaryotic-type	Interproscan
IPR035966 all species →	Homologous_superfamily	Phosphofructokinase superfamily	Interproscan
IPR015912 all species →	Conserved_site	Phosphofructokinase, conserved site	Interproscan
IPR000023 all species →	Domain	Phosphofructokinase domain	Interproscan
IPR022953 all species →	Family	ATP-dependent 6-phosphofructokinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13697 all species →	PHOSPHOFRUCTOKINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003872 all species →	Molecular Function	6-phosphofructokinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006096 all species →	Biological Process	glycolytic process	Interproscan
GO:0005945 all species →	Cellular Component	6-phosphofructokinase complex	Interproscan
GO:0006002 all species →	Biological Process	fructose 6-phosphate metabolic process	Interproscan
GO:0016208 all species →	Molecular Function	AMP binding	Interproscan
GO:0030388 all species →	Biological Process	fructose 1,6-bisphosphate metabolic process	Interproscan
GO:0042802 all species →	Molecular Function	identical protein binding	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan
GO:0061621 all species →	Biological Process	canonical glycolysis	Interproscan
GO:0070095 all species →	Molecular Function	fructose-6-phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00850	pfkA, PFK; 6-phosphofructokinase 1	EC:2.7.1.11	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4003295.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

8TPM > 0

4Conditions

8.0Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	2.88	7.96
apical branchlet · Temperature treatment at T0	6	2	0.93	3.09
apical branchlet · Temperature treatment at T25	5	1	0.90	4.52
apical branchlet · Control at T0	4	1	1.01	4.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	7.96
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	4.25
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.95
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.11
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	3.09
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	2.51
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	4.52
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	4.04
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.