Genomic Location: not available for this species
NR annotation: CAB4003360.1, branched-chain-amino-acid aminotransferase, cytosolic-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003360.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| A7SLW1 | Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis OX=45351 GN=v1g246094 PE=3 SV=1 |
| P24288 | Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus OX=10090 GN=Bcat1 PE=1 SV=2 |
| Q9GKM4 | Branched-chain-amino-acid aminotransferase, cytosolic OS=Ovis aries OX=9940 GN=BCAT1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003195 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01063 all species → | Aminotran_4 | Amino-transferase class IV | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR033939 all species → | Family | Branched-chain aminotransferase | Interproscan |
| IPR001544 all species → | Family | Aminotransferase class IV | Interproscan |
| IPR005786 all species → | Family | Branched-chain amino acid aminotransferase II | Interproscan |
| IPR036038 all species → | Homologous_superfamily | Aminotransferase-like, PLP-dependent enzymes | Interproscan |
| IPR043131 all species → | Homologous_superfamily | Branched-chain-amino-acid aminotransferase-like, N-terminal | Interproscan |
| IPR043132 all species → | Homologous_superfamily | Branched-chain-amino-acid aminotransferase-like, C-terminal | Interproscan |
| IPR018300 all species → | Conserved_site | Aminotransferase, class IV, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11825 all species → | SUBGROUP IIII AMINOTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004084 all species → | Molecular Function | branched-chain-amino-acid transaminase activity | Interproscan |
| GO:0009081 all species → | Biological Process | branched-chain amino acid metabolic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0009098 all species → | Biological Process | L-leucine biosynthetic process | Interproscan |
| GO:0009099 all species → | Biological Process | L-valine biosynthetic process | Interproscan |
CAB4003360.1.Transcript abundance of CAB4003360.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
