Gene detail

Detailed information of CAB4003462.1 in Paramuricea clavata

Genomic Location: pcla8_s004726:9492...10880
NR annotation: CAB4003462.1, transcription factor AP-1-like [Paramuricea clavata]
Species abbreviation PCLAV · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P18289	Transcription factor Jra OS=Drosophila melanogaster OX=7227 GN=Jra PE=1 SV=2
P12981	Transcription factor Jun OS=Coturnix japonica OX=93934 GN=JUN PE=2 SV=1
P18870	Transcription factor Jun OS=Gallus gallus OX=9031 GN=JUN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001571 (this species only)
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00170 all species →	bZIP_1	bZIP transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050946 all species →	Family	AP-1 Transcription Factor bZIP	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR002112 all species →	Family	Transcription factor Jun	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11462 all species →	JUN TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for CAB4003462.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.