Genomic Location: not available for this species
NR annotation: CAB4003509.1, poly(U)-binding-splicing factor PUF60-like isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003509.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q2HJG2 | Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1 |
| Q9UHX1 | Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens OX=9606 GN=PUF60 PE=1 SV=1 |
| Q3UEB3 | Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003878 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 all species → | RRM_1 | RNA recognition motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006532 all species → | Family | Poly-U binding splicing factor, PUF60-like | Interproscan |
| IPR000504 all species → | Domain | RNA recognition motif domain | Interproscan |
| IPR012677 all species → | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR034209 all species → | Domain | PUF60, RNA recognition motif 1 | Interproscan |
| IPR034211 all species → | Domain | PUF60, RNA recognition motif 2 | Interproscan |
| IPR035979 all species → | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR051974 all species → | Family | Poly(U)-binding-splicing regulator | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47330 all species → | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000381 all species → | Biological Process | regulation of alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0000380 all species → | Biological Process | alternative mRNA splicing, via spliceosome | Interproscan |
| GO:0006376 all species → | Biological Process | mRNA splice site recognition | Interproscan |
| GO:0071011 all species → | Cellular Component | precatalytic spliceosome | Interproscan |
| GO:0071013 all species → | Cellular Component | catalytic step 2 spliceosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12838 | PUF60; poly(U)-binding-splicing factor PUF60 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of CAB4003509.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 22.77 | 47.51 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 17.02 | 43.22 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 9.08 | 19.71 | |
| apical branchlet · Control at T0 | 4 | 3 | 23.20 | 52.47 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
