Genomic Location: not available for this species
NR annotation: CAB4003552.1, Fibrillin-1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003552.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P98133 | Fibrillin-1 OS=Bos taurus OX=9913 GN=FBN1 PE=1 SV=2 |
| P35555 | Fibrillin-1 OS=Homo sapiens OX=9606 GN=FBN1 PE=1 SV=4 |
| Q61554 | Fibrillin-1 OS=Mus musculus OX=10090 GN=Fbn1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003150 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00008 all species → | EGF | EGF-like domain | Domain | Interproscan |
| PF12662 all species → | cEGF | Complement Clr-like EGF-like | Domain | Interproscan |
| PF00683 all species → | TB | TB domain | Family | Interproscan |
| PF12661 all species → | hEGF | Human growth factor-like EGF | Domain | Interproscan |
| PF07645 all species → | EGF_CA | Calcium-binding EGF domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR009030 all species → | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR036773 all species → | Homologous_superfamily | TGF-beta binding (TB) domain superfamily | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR050751 all species → | Family | Extracellular matrix structural protein | Interproscan |
| IPR017878 all species → | Domain | TB domain | Interproscan |
| IPR026823 all species → | Domain | Complement Clr-like EGF domain | Interproscan |
| IPR013032 all species → | Conserved_site | EGF-like, conserved site | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR049883 all species → | Domain | NOTCH1 EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24034 all species → | EGF-LIKE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0050431 all species → | Molecular Function | transforming growth factor beta binding | Interproscan |
CAB4003552.1.Transcript abundance of CAB4003552.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 1.89 | 6.77 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 3.34 | 12.81 | |
| apical branchlet · Temperature treatment at T25 | 5 | 1 | 0.26 | 1.29 | |
| apical branchlet · Control at T0 | 4 | 2 | 1.97 | 4.01 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
