Genomic Location: not available for this species
NR annotation: CAB4003711.1, leucine-zipper-like transcriptional regulator 1, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003711.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5R4Q7 | Leucine-zipper-like transcriptional regulator 1 OS=Pongo abelii OX=9601 GN=LZTR1 PE=2 SV=1 |
| Q8N653 | Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens OX=9606 GN=LZTR1 PE=1 SV=2 |
| Q9CQ33 | Leucine-zipper-like transcriptional regulator 1 OS=Mus musculus OX=10090 GN=Lztr1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005448 (this species only) |
| Ubiquitin family | E3|E3 adaptor Cullin RING|BTB · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13418 all species → | Kelch_4 | Galactose oxidase, central domain | Repeat | Interproscan |
| PF00651 all species → | BTB | BTB/POZ domain | Domain | Interproscan |
| PF01344 all species → | Kelch_1 | Kelch motif | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000210 all species → | Domain | BTB/POZ domain | Interproscan |
| IPR011333 all species → | Homologous_superfamily | SKP1/BTB/POZ domain superfamily | Interproscan |
| IPR015915 all species → | Homologous_superfamily | Kelch-type beta propeller | Interproscan |
| IPR051568 all species → | Family | LZTR1/Attractin | Interproscan |
| IPR006652 all species → | Repeat | Kelch repeat type 1 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46376 all species → | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005794 all species → | Cellular Component | Golgi apparatus | Interproscan |
CAB4003711.1.Transcript abundance of CAB4003711.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 4 | 4.55 | 13.11 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 5.97 | 21.23 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 12.02 | 41.48 | |
| apical branchlet · Control at T0 | 4 | 2 | 5.82 | 21.40 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
