Genomic Location: not available for this species
NR annotation: CAB4003743.1, ribosome biogenesis TSR3 homolog [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003743.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9UJK0 | 18S rRNA aminocarboxypropyltransferase OS=Homo sapiens OX=9606 GN=TSR3 PE=1 SV=1 |
| Q5HZH2 | 18S rRNA aminocarboxypropyltransferase OS=Mus musculus OX=10090 GN=Tsr3 PE=1 SV=1 |
| Q12094 | 18S rRNA aminocarboxypropyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005539 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04068 all species → | RLI | Possible Fer4-like domain in RNase L inhibitor, RLI | Family | Interproscan |
| PF04034 all species → | Ribo_biogen_C | Ribosome biogenesis protein, C-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR022968 all species → | Family | 16S/18S rRNA aminocarboxypropyltransferase Tsr3 | Interproscan |
| IPR007209 all species → | Domain | RNase L inhibitor RLI-like, possible metal-binding domain | Interproscan |
| IPR007177 all species → | Domain | 16S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR20426 all species → | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0016740 all species → | Molecular Function | transferase activity | Interproscan |
| GO:0106388 all species → | Molecular Function | 18S rRNA aminocarboxypropyltransferase activity | Interproscan |
| GO:0030490 all species → | Biological Process | maturation of SSU-rRNA | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K09140 | TSR3; rRNA small subunit aminocarboxypropyltransferase | EC:2.5.1.157 | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of CAB4003743.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
