Genomic Location: not available for this species
NR annotation: CAB4003896.1, 5 -3 exoribonuclease 1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4003896.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P97789 | 5'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1 |
| Q8IZH2 | 5'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1 |
| P40383 | 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001148 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF17846 all species → | XRN_M | Xrn1 helical domain | Domain | Interproscan |
| PF18334 all species → | XRN1_D2_D3 | Exoribonuclease Xrn1 D2/D3 domain | Domain | Interproscan |
| PF03159 all species → | XRN_N | XRN 5'-3' exonuclease N-terminus | Family | Interproscan |
| PF18129 all species → | SH3_12 | Xrn1 SH3-like domain | Domain | Interproscan |
| PF18332 all species → | XRN1_D1 | Exoribonuclease Xrn1 D1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047007 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, D1 domain superfamily | Interproscan |
| IPR047008 all species → | Homologous_superfamily | 5'-3' exoribonuclease 1, SH3-like domain superfamily | Interproscan |
| IPR041412 all species → | Domain | Xrn1, helical domain | Interproscan |
| IPR041106 all species → | Domain | Exoribonuclease Xrn1, D2/D3 domain | Interproscan |
| IPR004859 all species → | Domain | Xrn1, N-terminal | Interproscan |
| IPR027073 all species → | Family | 5'-3' exoribonuclease | Interproscan |
| IPR041385 all species → | Domain | 5'-3' exoribonuclease 1, SH3-like domain | Interproscan |
| IPR016494 all species → | Family | 5'-3' exoribonuclease 1 | Interproscan |
| IPR040992 all species → | Domain | 5'-3' exoribonuclease 1, D1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12341 all species → | 5'->3' EXORIBONUCLEASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004527 all species → | Molecular Function | exonuclease activity | Interproscan |
| GO:0000956 all species → | Biological Process | nuclear-transcribed mRNA catabolic process | Interproscan |
| GO:0008409 all species → | Molecular Function | 5'-3' exonuclease activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12618 | XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1 | EC:3.1.13.- | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of CAB4003896.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 5.61 | 11.26 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 2.03 | 5.31 | |
| apical branchlet · Temperature treatment at T25 | 5 | 4 | 4.88 | 8.84 | |
| apical branchlet · Control at T0 | 4 | 2 | 1.89 | 5.83 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
