Gene detail

Detailed information of CAB4004205.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4004205.1, cytochrome b-c1 complex subunit Rieske, mitochondrial-like [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Sequence

No sequence record for CAB4004205.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69BJ6	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Symphalangus syndactylus OX=9590 GN=UQCRFS1 PE=3 SV=1
Q9VQ29	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Drosophila melanogaster OX=7227 GN=RFeSP PE=1 SV=3
Q69BJ8	Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha OX=9519 GN=UQCRFS1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02921 all species →	UCR_TM	Ubiquinol cytochrome reductase transmembrane region	Family	Interproscan
PF00355 all species →	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036922 all species →	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan
IPR005805 all species →	Domain	Rieske iron-sulphur protein, C-terminal	Interproscan
IPR004192 all species →	Domain	Cytochrome b-c1 complex subunit Rieske, transmembrane domain	Interproscan
IPR006317 all species →	Domain	Ubiquinol-cytochrome c reductase, iron-sulphur subunit	Interproscan
IPR014349 all species →	Family	Rieske iron-sulphur protein	Interproscan
IPR037008 all species →	Homologous_superfamily	Cytochrome bc1 complex subunit Rieske, transmembrane domain superfamily	Interproscan
IPR017941 all species →	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10134 all species →	CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008121 all species →	Molecular Function	ubiquinol-cytochrome-c reductase activity	Interproscan
GO:0005750 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00411	UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit	EC:7.1.1.8	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4004205.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

12TPM > 0

4Conditions

210.4Max TPM

54.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	4	74.65	173.83
apical branchlet · Temperature treatment at T0	6	6	88.15	210.40
apical branchlet · Temperature treatment at T25	5	1	14.94	74.69
apical branchlet · Control at T0	4	1	24.88	99.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	173.83
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	109.53
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	99.14
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	65.41
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	210.40
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	111.61
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	104.53
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	55.85
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	23.60
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	22.91
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	74.69
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	99.52
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.