Genomic Location: not available for this species
NR annotation: CAB4004254.1, histone-lysine N-methyltransferase SETDB1 isoform X2, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4004254.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6INA9 | Histone-lysine N-methyltransferase SETDB1 OS=Xenopus laevis OX=8355 GN=setdb1 PE=2 SV=1 |
| Q08BR4 | Histone-lysine N-methyltransferase SETDB1-B OS=Danio rerio OX=7955 GN=setdb1b PE=2 SV=2 |
| Q15047 | Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens OX=9606 GN=SETDB1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002134 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00856 all species → | SET | SET domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051516 all species → | Family | Histone-lysine N-methyltransferase SETDB | Interproscan |
| IPR001214 all species → | Domain | SET domain | Interproscan |
| IPR046341 all species → | Homologous_superfamily | SET domain superfamily | Interproscan |
| IPR003616 all species → | Domain | Post-SET domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46024 all species → | HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0010629 all species → | Biological Process | negative regulation of gene expression | Interproscan |
| GO:0046974 all species → | Molecular Function | histone H3K9 methyltransferase activity | Interproscan |
| GO:0051567 all species → | Biological Process | obsolete histone H3-K9 methylation | Interproscan |
| GO:0070828 all species → | Biological Process | heterochromatin organization | Interproscan |
| GO:0090309 all species → | Biological Process | obsolete positive regulation of DNA methylation-dependent heterochromatin formation | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
CAB4004254.1.Transcript abundance of CAB4004254.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
