Genomic Location: not available for this species
NR annotation: CAB4004381.1, transcription factor IIIB 90 kDa subunit-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4004381.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q92994 | Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1 |
| Q8CFK2 | Transcription factor IIIB 90 kDa subunit OS=Mus musculus OX=10090 GN=Brf1 PE=1 SV=1 |
| Q9P6R0 | Transcription factor IIIB 60 kDa subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brf1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003281 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00382 all species → | TFIIB | Transcription factor TFIIB repeat | Domain | Interproscan |
| PF07741 all species → | BRF1 | Brf1-like TBP-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013763 all species → | Domain | Cyclin-like domain | Interproscan |
| IPR000812 all species → | Family | Transcription factor TFIIB | Interproscan |
| IPR013150 all species → | Domain | Transcription factor TFIIB, cyclin-like domain | Interproscan |
| IPR011665 all species → | Domain | Brf1, TBP-binding domain | Interproscan |
| IPR036915 all species → | Homologous_superfamily | Cyclin-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11618 all species → | TRANSCRIPTION INITIATION FACTOR IIB-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000126 all species → | Cellular Component | transcription factor TFIIIB complex | Interproscan |
| GO:0000995 all species → | Molecular Function | RNA polymerase III general transcription initiation factor activity | Interproscan |
| GO:0001006 all species → | Molecular Function | RNA polymerase III type 3 promoter sequence-specific DNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006352 all species → | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0006383 all species → | Biological Process | transcription by RNA polymerase III | Interproscan |
| GO:0070897 all species → | Biological Process | transcription preinitiation complex assembly | Interproscan |
| GO:0097550 all species → | Cellular Component | transcription preinitiation complex | Interproscan |
| GO:0017025 all species → | Molecular Function | TBP-class protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15196 | BRF1, GTF3B; transcription factor IIIB 90 kDa subunit | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of CAB4004381.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
