Genomic Location: not available for this species
NR annotation: CAB4004467.1, alpha-actinin, sarcomeric-like isoform X2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4004467.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| L7UZ85 | Alpha-actinin OS=Dermatophagoides farinae OX=6954 PE=1 SV=1 |
| P05094 | Alpha-actinin-1 OS=Gallus gallus OX=9031 GN=ACTN1 PE=1 SV=3 |
| Q9Z1P2 | Alpha-actinin-1 OS=Rattus norvegicus OX=10116 GN=Actn1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002750 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00435 all species → | Spectrin | Spectrin repeat | Domain | Interproscan |
| PF08726 all species → | EFhand_Ca_insen | Ca2+ insensitive EF hand | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036872 all species → | Homologous_superfamily | CH domain superfamily | Interproscan |
| IPR018159 all species → | Repeat | Spectrin/alpha-actinin | Interproscan |
| IPR002048 all species → | Domain | EF-hand domain | Interproscan |
| IPR002017 all species → | Repeat | Spectrin repeat | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR014837 all species → | Domain | EF-hand, Ca insensitive | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11915 all species → | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0030018 all species → | Cellular Component | Z disc | Interproscan |
| GO:0030036 all species → | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0030054 all species → | Cellular Component | cell junction | Interproscan |
| GO:0030864 all species → | Cellular Component | cortical actin cytoskeleton | Interproscan |
| GO:0042995 all species → | Cellular Component | cell projection | Interproscan |
| GO:0051015 all species → | Molecular Function | actin filament binding | Interproscan |
| GO:0055001 all species → | Biological Process | muscle cell development | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05699 | ACTN1_4; actinin alpha 1/4 | - | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB4004467.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
