Genomic Location: not available for this species
NR annotation: CAB4004567.1, TOM1 2 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4004567.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q6ZVM7 | TOM1-like protein 2 OS=Homo sapiens OX=9606 GN=TOM1L2 PE=1 SV=1 |
| Q5SRX1 | TOM1-like protein 2 OS=Mus musculus OX=10090 GN=Tom1l2 PE=1 SV=1 |
| Q68FJ8 | TOM1-like protein 2 OS=Xenopus laevis OX=8355 GN=tom1l2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005364 (this species only) |
| Ubiquitin family | UBD|Alpha-Helix|GAT · all ubiquitin genes in this species |
| Ubiquitin family | UBD|Alpha-Helix|VHS · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00790 all species → | VHS | VHS domain | Repeat | Interproscan |
| PF03127 all species → | GAT | GAT domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002014 all species → | Domain | VHS domain | Interproscan |
| IPR008942 all species → | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR014645 all species → | Family | Target of Myb protein 1 | Interproscan |
| IPR038425 all species → | Homologous_superfamily | GAT domain superfamily | Interproscan |
| IPR004152 all species → | Domain | GAT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13856 all species → | VHS DOMAIN CONTAINING PROTEIN FAMILY | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035091 all species → | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0043130 all species → | Molecular Function | ubiquitin binding | Interproscan |
| GO:0005768 all species → | Cellular Component | endosome | Interproscan |
| GO:0007165 all species → | Biological Process | signal transduction | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0030276 all species → | Molecular Function | clathrin binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K26401 | TOM1, TOM1L1_2; target of Myb membrane trafficking protein 1 and related proteins | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of CAB4004567.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
