Genomic Location: not available for this species
NR annotation: CAB4004613.1, 39S ribosomal L46, mitochondrial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4004613.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q3SZ22 | Large ribosomal subunit protein mL46 OS=Bos taurus OX=9913 GN=MRPL46 PE=2 SV=1 |
| Q5RK00 | Large ribosomal subunit protein mL46 OS=Rattus norvegicus OX=10116 GN=Mrpl46 PE=2 SV=1 |
| Q9EQI8 | Large ribosomal subunit protein mL46 OS=Mus musculus OX=10090 GN=Mrpl46 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003482 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00293 all species → | NUDIX | NUDIX domain | Domain | Interproscan |
| PF11788 all species → | MRP-L46 | 39S mitochondrial ribosomal protein L46 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000086 all species → | Domain | NUDIX hydrolase domain | Interproscan |
| IPR021757 all species → | Domain | Large ribosomal subunit protein mL46, N-terminal | Interproscan |
| IPR015797 all species → | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR040008 all species → | Family | Large ribosomal subunit protein mL46 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13124 all species → | 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005762 all species → | Cellular Component | mitochondrial large ribosomal subunit | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17427 | MRPL46; large subunit ribosomal protein L46 | - | Ribosome | ko03011 | deepkoala |
Transcript abundance of CAB4004613.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
