Genomic Location: not available for this species
NR annotation: CAB4005124.1, PDZ domain-containing 8, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005124.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005389 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| PF00130 all species → | C1_1 | Phorbol esters/diacylglycerol binding domain (C1 domain) | Domain | Interproscan |
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR002219 all species → | Domain | Protein kinase C-like, phorbol ester/diacylglycerol-binding domain | Interproscan |
| IPR046349 all species → | Homologous_superfamily | C1-like domain superfamily | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR039275 all species → | Family | PDZ domain-containing protein 8 | Interproscan |
| IPR031468 all species → | Domain | Synaptotagmin-like mitochondrial-lipid-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21519 all species → | PDZ DOMAIN-CONTAINING PROTEIN 8 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0044233 all species → | Cellular Component | mitochondria-associated endoplasmic reticulum membrane contact site | Interproscan |
| GO:0051560 all species → | Biological Process | mitochondrial calcium ion homeostasis | Interproscan |
| GO:1990456 all species → | Biological Process | mitochondrion-endoplasmic reticulum membrane tethering | Interproscan |
| GO:0008289 all species → | Molecular Function | lipid binding | Interproscan |
CAB4005124.1.Transcript abundance of CAB4005124.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
