Genomic Location: not available for this species
NR annotation: CAB4005361.1, peroxiredoxin-4 isoform X1 [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005361.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9BGI2 | Peroxiredoxin-4 OS=Bos taurus OX=9913 GN=PRDX4 PE=2 SV=1 |
| O08807 | Peroxiredoxin-4 OS=Mus musculus OX=10090 GN=Prdx4 PE=1 SV=1 |
| Q9Z0V5 | Peroxiredoxin-4 OS=Rattus norvegicus OX=10116 GN=Prdx4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001467 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10417 all species → | 1-cysPrx_C | C-terminal domain of 1-Cys peroxiredoxin | Domain | Interproscan |
| PF00578 all species → | AhpC-TSA | AhpC/TSA family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR019479 all species → | Domain | Peroxiredoxin, C-terminal | Interproscan |
| IPR036249 all species → | Homologous_superfamily | Thioredoxin-like superfamily | Interproscan |
| IPR050217 all species → | Family | Thiol-specific antioxidant peroxiredoxin | Interproscan |
| IPR000866 all species → | Domain | Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant | Interproscan |
| IPR013766 all species → | Domain | Thioredoxin domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10681 all species → | THIOREDOXIN PEROXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0051920 all species → | Molecular Function | peroxiredoxin activity | Interproscan |
| GO:0005783 all species → | Cellular Component | endoplasmic reticulum | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006979 all species → | Biological Process | response to oxidative stress | Interproscan |
| GO:0008379 all species → | Molecular Function | thioredoxin peroxidase activity | Interproscan |
| GO:0033554 all species → | Biological Process | cellular response to stress | Interproscan |
| GO:0042744 all species → | Biological Process | hydrogen peroxide catabolic process | Interproscan |
| GO:0045454 all species → | Biological Process | cell redox homeostasis | Interproscan |
| GO:0016209 all species → | Molecular Function | antioxidant activity | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03386 | PRDX2_4, ahpC; peroxiredoxin 2/4 | EC:1.11.1.24 | Exosome | ko04147 | deepkoala |
Transcript abundance of CAB4005361.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 5 | 31.63 | 51.99 | |
| apical branchlet · Temperature treatment at T0 | 6 | 4 | 31.28 | 73.18 | |
| apical branchlet · Temperature treatment at T25 | 5 | 3 | 11.73 | 30.77 | |
| apical branchlet · Control at T0 | 4 | 1 | 6.69 | 26.74 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
