Genomic Location: not available for this species
NR annotation: CAB4005435.1, ubiquitin- ligase E3A-like, partial [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005436.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q05086 | Ubiquitin-protein ligase E3A OS=Homo sapiens OX=9606 GN=UBE3A PE=1 SV=4 |
| O08759 | Ubiquitin-protein ligase E3A OS=Mus musculus OX=10090 GN=Ube3a PE=1 SV=2 |
| Q6PAV2 | Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus OX=10090 GN=Herc4 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006932 (this species only) |
| Ubiquitin family | E3|E3 activity|HECT · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00632 all species → | HECT | HECT-domain (ubiquitin-transferase) | Domain | Interproscan |
| PF16558 all species → | AZUL | Amino-terminal Zinc-binding domain of ubiquitin ligase E3A | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000569 all species → | Domain | HECT domain | Interproscan |
| IPR035983 all species → | Homologous_superfamily | HECT, E3 ligase catalytic domain | Interproscan |
| IPR044611 all species → | Family | Ubiquitin-protein ligase E3A/B/C-like | Interproscan |
| IPR042556 all species → | Homologous_superfamily | Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain superfamily | Interproscan |
| IPR032353 all species → | Domain | Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45700 all species → | UBIQUITIN-PROTEIN LIGASE E3C | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0000209 all species → | Biological Process | protein polyubiquitination | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
CAB4005436.1.Transcript abundance of CAB4005436.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
