Genomic Location: pcla8_s005317:15095...28859
NR annotation: CAB4005454.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
| CDS |
| PACLA_8A012933 |
| Transcript |
| rna-PACLA_8A012933 |
| Protein |
| CAB4005454.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0023394 (this species only) |
CAB4005454.1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR052082 all species → | Family | Peripheral myelin sheath structural protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23348 all species → | PERIAXIN/AHNAK | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0043034 all species → | Cellular Component | costamere | Interproscan |
| GO:0043484 all species → | Biological Process | regulation of RNA splicing | Interproscan |
CAB4005454.1.Transcript abundance of CAB4005454.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
