Detailed information of CAB4005478.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4005478.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4005478.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A9JS51Ciliary microtubule inner protein 2B OS=Xenopus laevis OX=8355 GN=cimip2b PE=2 SV=1
A8E5W8Ciliary microtubule inner protein 2B OS=Xenopus tropicalis OX=8364 GN=cimip2b PE=2 SV=1
A2RRW4Ciliary microtubule inner protein 2B OS=Danio rerio OX=7955 GN=cimip2b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007931 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10629
all species →		DUF2475Protein of unknown function (DUF2475)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018902
all species →		DomainCiliary microtubule inner protein 2A-C-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22146
all species →		CAT EYE SYNDROME CRITICAL REGION PROTEIN 6Interproscan

 Gene Ontology
No Gene Ontology signature was detected for CAB4005478.1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4005478.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4005478.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 0 0.00 0.00
apical branchlet · Temperature treatment at T0 6 0 0.00 0.00
apical branchlet · Temperature treatment at T25 5 0 0.00 0.00
apical branchlet · Control at T0 4 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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