Genomic Location: not available for this species
NR annotation: CAB4005525.1, prephenate dehydratase [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005525.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q92142 | Tryptophan 5-hydroxylase OS=Xenopus laevis OX=8355 GN=tph1 PE=2 SV=1 |
| P70080 | Tryptophan 5-hydroxylase 1 OS=Gallus gallus OX=9031 GN=TPH1 PE=1 SV=1 |
| P09810 | Tryptophan 5-hydroxylase 1 OS=Rattus norvegicus OX=10116 GN=Tph1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002500 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01842 all species → | ACT | ACT domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002912 all species → | Domain | ACT domain | Interproscan |
| IPR001273 all species → | Family | Aromatic amino acid hydroxylase | Interproscan |
| IPR045865 all species → | Homologous_superfamily | ACT-like domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11473 all species → | AROMATIC AMINO ACID HYDROXYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004497 all species → | Molecular Function | monooxygenase activity | Interproscan |
| GO:0005506 all species → | Molecular Function | iron ion binding | Interproscan |
| GO:0009072 all species → | Biological Process | aromatic amino acid metabolic process | Interproscan |
CAB4005525.1.Transcript abundance of CAB4005525.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
