Genomic Location: not available for this species
NR annotation: CAB4005641.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families
CAB4005642.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q99PI4 | Phosphatidate phosphatase LPIN3 OS=Mus musculus OX=10090 GN=Lpin3 PE=1 SV=1 |
| Q7TNN8 | Phosphatidate phosphatase LPIN3 OS=Mus spretus OX=10096 GN=Lpin3 PE=2 SV=1 |
| Q9BQK8 | Phosphatidate phosphatase LPIN3 OS=Homo sapiens OX=9606 GN=LPIN3 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004470 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16876 all species → | Lipin_mid | Lipin/Ned1/Smp2 multi-domain protein middle domain | Family | Interproscan |
| PF08235 all species → | LNS2 | LNS2 (Lipin/Ned1/Smp2) | Domain | Interproscan |
| PF04571 all species → | Lipin_N | lipin, N-terminal conserved region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031703 all species → | Domain | Lipin, middle domain | Interproscan |
| IPR026058 all species → | Family | LIPIN family | Interproscan |
| IPR036412 all species → | Homologous_superfamily | HAD-like superfamily | Interproscan |
| IPR013209 all species → | Domain | Lipin/Ned1/Smp2 (LNS2) | Interproscan |
| IPR031315 all species → | Domain | LNS2/PITP | Interproscan |
| IPR007651 all species → | Domain | Lipin, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12181 all species → | LIPIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0008195 all species → | Molecular Function | phosphatidate phosphatase activity | Interproscan |
| GO:0009062 all species → | Biological Process | fatty acid catabolic process | Interproscan |
| GO:0019432 all species → | Biological Process | triglyceride biosynthetic process | Interproscan |
| GO:0032869 all species → | Biological Process | cellular response to insulin stimulus | Interproscan |
| GO:0044255 all species → | Biological Process | obsolete cellular lipid metabolic process | Interproscan |
| GO:0045944 all species → | Biological Process | positive regulation of transcription by RNA polymerase II | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15728 | LPIN; phosphatidate phosphatase LPIN | EC:3.1.3.4 | Protein phosphatases and associated proteins | ko01009 | deepkoala |
Transcript abundance of CAB4005642.1 across 21 RNA-seq samples of Paramuricea clavata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| apical branchlet · Control at T25 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T0 | 6 | 0 | 0.00 | 0.00 | |
| apical branchlet · Temperature treatment at T25 | 5 | 0 | 0.00 | 0.00 | |
| apical branchlet · Control at T0 | 4 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM,
StringTie quantification over 21 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
