Detailed information of CAB4005649.1 in Paramuricea clavata

Genomic Location: not available for this species
NR annotation: CAB4005649.1, DNA polymerase epsilon catalytic subunit A [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

 Sequence
No sequence record for CAB4005649.1 in PCLAV (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9WVF7DNA polymerase epsilon catalytic subunit A OS=Mus musculus OX=10090 GN=Pole PE=1 SV=3
Q07864DNA polymerase epsilon catalytic subunit A OS=Homo sapiens OX=9606 GN=POLE PE=1 SV=5
Q9VCN1DNA polymerase epsilon catalytic subunit 1 OS=Drosophila melanogaster OX=7227 GN=PolE1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002978 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08490
all species →		DUF1744Domain of unknown function (DUF1744)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029703
all species →		FamilyDNA polymerase epsilon catalytic subunitInterproscan
IPR013697
all species →		DomainDNA polymerase epsilon, catalytic subunit A, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10670
all species →		DNA POLYMERASE EPSILON CATALYTIC SUBUNIT AInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000278
all species →		Biological Processmitotic cell cycleInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003887
all species →		Molecular FunctionDNA-directed DNA polymerase activityInterproscan
GO:0006260
all species →		Biological ProcessDNA replicationInterproscan
GO:0006272
all species →		Biological Processleading strand elongationInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006287
all species →		Biological Processbase-excision repair, gap-fillingInterproscan
GO:0006297
all species →		Biological Processnucleotide-excision repair, DNA gap fillingInterproscan
GO:0008310
all species →		Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activityInterproscan
GO:0008622
all species →		Cellular Componentepsilon DNA polymerase complexInterproscan
GO:0045004
all species →		Biological ProcessDNA replication proofreadingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for CAB4005649.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4005649.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples
12TPM > 0
4Conditions
45.2Max TPM
8.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
apical branchlet · Control at T25 6 4 12.77 41.95
apical branchlet · Temperature treatment at T0 6 4 13.98 45.24
apical branchlet · Temperature treatment at T25 5 3 3.78 17.09
apical branchlet · Control at T0 4 1 0.45 1.79

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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