Gene detail

Detailed information of CAB4005738.1 in Paramuricea clavata

Genomic Location: pcla8_s005410:16838...19324
NR annotation: CAB4005738.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paramuricea clavata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-PACLA_8A077872-2

GTGGAAAGAAATATTTATCGTCTGTACCATCTTATCGGACCCGGTTCAACAGTAAGTGTACTTGTTACAGCTTGTAAGTTAggaattaatattatatttacaagACATTTCCCTCAACTAACTAAATGTACGTTTCATATAATTGAAGGTGGGAATAGTTGCCCTCCCAAACATTTGAATTTAAGACTTAATGTGGCACGATATATTTATCCACACAAAATTCTTTATTAAAAATTCGTGTCCGCTAGAAAAATAACGACTTACTTATATGACATGACGCGTCACGATTTGCTCACCCTGTCTCGCGCCAAAAAACAGTGCGCTATACCTTATTATTGTGTCTCTGGTGCAGGAATACGTTGAAATTGTGCTCGCCGTATGGTACCGCAATGACTTTTCCATACACCAAATAAAAAAATCTATAAtgtcaaaaactttttttatcGAAGAAAACGACACATTTTATTTCAGAATTATGTTTTCGCATCCACTGATTTTGGTTCACTTATCTCGAACGAGTATTCGGCCATatttttgtttggaaaaataatatttaaattattcACCATTCTTTAGGCCCAGTGCATGCGCAGATAATTTAATTTACCATTCTTTCATGTCCAGTGCATACGACGCATCAACGCTCGTTTCTAATTCGAACAACCAGGGTGTTGAACAGCCTAGCTGACGAACTAACACGATAAATTTGAACTCATTTAAATCTACAATTCTAAGTTATTACTTCCGTGCTTTGGAAATTTCCTACGATCCTGAAAATCCAAGAACATTCAAAACTATATCTACCAAGTGTAATACCGCTCGAACTTTGGTTCAGCCTCTTAAGTGCTGCTATTATAGTTATAGTTTTATTTAGATAGTTTCTTTATGCTTGTATATGTCCTAATTCGGGCGcgcagtaattggctcacgctgttgCGTCACACAGCCTATATAGTCATGTATattattcttgttcttgttatagttttgtgttttgtaacatggcgaaactaataaataaataaataaataaaataaatagataTTTCCCCCGTTGTTTTGATAAAGCGCCTGCTTTCCTTGCATGGAAAAATATCATGCGCGGACGGCAAGAGGTGGAATGCCGGAAAAAATGTGTAATAAAATTTATGACTTCGTTCCTATAAGATTGGTAATTAAATTCCATTTTTCTATGTAGGCACTCCAAATCATTATGGGAAACATTTCATTACTGGGTTTACAGCTCAGAATAATAATTATCGAGATCAGGACTACATTGGATTGTCAATGCTTGCCCCCTACGACACAAACGTTACGATCTTTGGTACTCTGTCAAGCAAGCCTTGGAACTACACTGTTCATATTAAAGAAGGAGAAAGTTATGAGTATAAACTGCCGATTTCACTGCGAATGGAGAAATCAAAATACCGGCAGAATGGTATTCAAATTTTATCAACTAGAGACATTTCAGTATTCTGTTTAAATCAGCAAGGTTATAGACAGGCAGCGGATGGATACTTGGCTTTACCGACCAACACGCTAGGTTTAGTTTATGTTGCTGCATCATATCAACCGTATAGTACGAGCTATAGAGCAAATATCGCCGTAATATCAGcacataacaacaacacgattaTTGTTCTTCCCAACAAGAACGCGGTCATATACTATCGCGGTCTCTGGTATGATGACAGTACATCGCTATTATACATAACCCTAGTCCTTGAAAAACTTGAAGCACTGTACATTTCGGGTTCATCAGATTTATCTGGAACAATTGTTATCGCAAGTAAACCAGTGACGGTTATTTCAGGCGTAGACTATGCACGTATTCTGGGATCGTCTGATTTCTTAGAAGCGTTCCTTTTACCTGTTTCATCGTGGGGATATGAATACATATTGACAACGGTAGGAGCGATGGATAAAAATCAGGGGGATATTTTTCGTATCTTTGCGTATGAAAATAATACTGTTGTTGAAAGTGGGTACTGGACCAAAATGTTGTCATCCGGAGCATACACAGAGTTGATATTGCAAAAAAATCTTACATCGTTTGTTAAATGTAGCAACCCATGTCAAGTGGTGCAGTACGTCCGACGACACTATATTGGCGGGAAATATGCTGACCCTTCAATGATAGTTCTGCCATCAACAAGTCAGTTTCTTTCTTACTACCGCGTGATACTTCCTCGTGGTTCAGAATATCATGATTCCATTACTATAATGATACAAAATGAAGATATAGAAGGTCTATATATGAATGGATTAAAACTGAATGGCTTACGATGGGAAAGGATCAATGGAACAAATTATGTATGGACGGTCGTAAGTTTATCCGATCCAAATACTGTCACAGTCTATCATACTTCTTCGGCTGTAAAGTTTGGTCTCCTTGTATTTGGCTGGAATAATGGTGTTTCCTATGCTTACTCTGGTGGATTTGGTTTACATAACAATGCAAATGGTAAGGTGCTTTACTGGTGgtaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001017 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17517 all species →	IgGFc_binding	IgGFc binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035234 all species →	Domain	IgGFc-binding protein, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46534 all species →	IGGFC_BINDING DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for CAB4005738.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06002	PGA; pepsin A	EC:3.4.23.1	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of CAB4005738.1 across 21 RNA-seq samples of Paramuricea clavata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

21Samples

11TPM > 0

4Conditions

4.3Max TPM

1.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
apical branchlet · Control at T25	6	5	1.42	3.92
apical branchlet · Temperature treatment at T0	6	2	0.32	1.69
apical branchlet · Temperature treatment at T25	5	2	1.09	3.38
apical branchlet · Control at T0	4	2	1.34	4.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR19977433	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	3.92
SRR19977455	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	2.08
SRR19977444	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	1.47
SRR19977440	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.94
SRR19977441	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.09
SRR19977439	apical branchlet · Control at T25	apical branchlet	not recorded	Control at T25	SRP384900	0.00
SRR19977438	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	1.69
SRR19977427	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.23
SRR19977426	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977428	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977436	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977437	apical branchlet · Temperature treatment at T0	apical branchlet	not recorded	Temperature treatment at T0	SRP384900	0.00
SRR19977425	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	3.38
SRR19977435	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	2.09
SRR19977432	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977434	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977463	apical branchlet · Temperature treatment at T25	apical branchlet	not recorded	Temperature treatment at T25	SRP384900	0.00
SRR19977442	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	4.30
SRR19977443	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	1.07
SRR19977445	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00
SRR19977446	apical branchlet · Control at T0	apical branchlet	not recorded	Control at T0	SRP384900	0.00

Source: CnidoSite RNA-seq expression matrices (PCLAV_TPM, StringTie quantification over 21 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.